Proceedings of the XLVII Italian
Society of Agricultural Genetics - SIGA Annual Congress
Verona,
Italy - 24/27 September, 2003
ISBN 88-900622-4-X
Poster
Abstract - 2.04
AFLP
markers DISCLOSE diversity in a collection of artichoke germplasm
G. SONNANTE*, M. IPPEDICO*, A.
DE PAOLIS**, D. PIGNONE*
*) CNR, Intitute
of Plant Genetics, Research Section of Bari
**) CNR,
Institute of Plant Production Science, Section of Lecce
AFLP, artichoke, germplasm,
wild progenitor, genetic similarity
Artichoke, Cynara cardunculus L. var.
scolymus (L.) Fiori is a diploid outcrossing species, originated in
the Mediterranean basin, which has been much appreciated since ancient times
for both its tasty heads and pharmaceutical properties. Artichoke is
traditionally cultivated all over the Mediterranean Basin and is generally
vegetatively propagated; the highest density of cultivation is found in Italy,
where the largest germplasm diversity is also observed. Wild cardoons are also
widespread in Central and Southern Italy.
The primary gene
pool of artichoke includes wild (C.
cardunculus L. var. sylvestris Lam.) and
cultivated (C. cardunculus L.
var. altilis DC) cardoons.
These latter subspecies are genetically cohesive with the cultivated
artichokes. The wild cardoons are considered to be the progenitors of
cultivated Cynara.
In order to
assess genetic variation and relationships among artichoke varieties and
between these and cardoons, AFLP markers were developed and used in genetic
analysis. Forty artichoke varieties and/or
ecotypes were selected from the world-wide artichoke living collection held at
the Institute of Plant Genetics in Bari according to their morpho-productive
characteristics and geographical origin; moreover, one genotype of cultivated
cardoon and two genotypes of wild cardoon, were included in the analysis pool.
AFLP analysis was performed using fluorescence labelled selective primers and
samples were run in an automated sequencer. Nine primer combinations were
selected for further analysis out of the 24 initially tested. A total of 650
fragments were detected, 88.46% of which were polymorphic. The data were scored
as presence or absence of a given fragment and similarity among samples was
calculated on the basis of Jaccard's index. The similarity matrix so obtained
was used to perform cluster analyses using UPGMA method and principal
coordinate analysis (PCO). Both the dendrogram and PCO plot evidenced a clear
separation of the cultivated and wild cardoon from the cultivated artichoke.
Within the cultivated artichokes, genotypes were clustered mostly on the basis
of the morphological characteristics of capitula, which allow to distinguish
four main groups in this crop: "Spinosi", "Violetti",
"Catanesi" and "Romaneschi".
It is worth noticing that AFLP markers, thanks to their high level of
polymorphism in this gene pool, proved particularly useful in distinguishing
between closely related genotypes and between morpho-goups. Their usefulness in
managing artichoke living collections is discussed in detail.